I am sorry for the late answer but I was on hollydays and because you did send an email to the company I got it today.
I have no problems with your hip rafter. But because of your drillings with a lot of different diameters at the same beam you get a lot of measures. The measures have fix size on paper so they need a fix amount of space on the drawing. They do not change size with the scale of the drawing. If the size of your paper is to small you will get problems with the drawing because there is no space left for the beams itself. Just try a bigger paper size and you will see that everything is ok. If you do not need a printed drawing with correct scale you can print a big drawing an a smaller paper.